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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV10468894 hCoV-19/lion/Singapore/NParks-G11342/2021 EPI_ISL_7016463 RNA virus Severe acute respiratory syndrome coronavirus 2 Singapore 2021-11-09 Panthera Leo 29733 2021-12-03 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID National Parks Board, Centre for Animal & Veterinary Sciences Wang, Yifan; Ong, Jasmine; Tan, Adrian, Fernandez, Charlene; Huangfu, Taoqi National Parks Board, Centre for Animal & Veterinary Sciences 29732 100.00
OEAV5067133 SARS-CoV-2/Panthera Leo/SGP/NParks-G11342/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes OL677176 RNA viruses Severe acute respiratory syndrome coronavirus 2 Singapore 2021-11-09 Panthera leo 29733 2021-11-30 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Wang,Y., Ong,J., Tan,A., Fernandez,C.J. and Huangfu,T. Centre for Animal & Veterinary Sciences 29732 100.00
OEAV5120470 SARS-CoV-2/Panthera leo persica/CZE/3855-1/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes OL752444 RNA viruses Severe acute respiratory syndrome coronavirus 2 Czech Republic 2021-02-25 Panthera leo persica 29717 2021-12-07 feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Nagy,A., Cernikova,L. and Stara,M. Molecular Biology, State Veterinary Institute Prague 29717 100.00
OEAV5120471 SARS-CoV-2/Panthera tigris jacksoni/CZE/4243-7/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes OL752442 RNA viruses Severe acute respiratory syndrome coronavirus 2 Czech Republic 2021-03-03 Panthera tigris jacksoni 29717 2021-12-07 feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Nagy,A., Cernikova,L. and Stara,M. Molecular Biology, State Veterinary Institute Prague 29717 100.00
OEAV5283013 SARS-CoV-2/Panthera tigris/USA/Tiger2-VA/2021 MZ305033 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-04-09 Panthera tigris 29733 2021-12-15 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Mitchell,P.K., Martins,M., Reilly,T., Caserta,L., Anderson,R., Cronk,B., Murphy,J., Goodrich,E.L. and Diel,D.G. Population Medicine and Diagnostic Sciences, Cornell University 29728 99.98
OEAV5283014 SARS-CoV-2/Panthera tigris/USA/Tiger3-VA/2021 MZ305031 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-04-13 Panthera tigris 29712 2021-12-15 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Mitchell,P.K., Martins,M., Reilly,T., Caserta,L., Anderson,R., Cronk,B., Murphy,J., Goodrich,E.L. and Diel,D.G. Population Medicine and Diagnostic Sciences, Cornell University 29703 99.97
OEAV9667614 hCoV-19/lion/SouthAfrica/ZARV-ZRU125/2021 EPI_ISL_6261983 RNA virus Severe acute respiratory syndrome coronavirus 2 South Africa 2021-06-22 Panthera leo 29846 2021-11-14 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID ZARV, Department Medical Virology, University of Pretoria Amy Strydom, Adriano Mendes, Katja Koeppel, Lia Rotherham and Marietjie Venter ZARV, Department Medical Virology, University of Pretoria 29242 97.98
OEAV9667615 hCoV-19/lion/SouthAfrica/ZARV-ZRU127/2021 EPI_ISL_6261987 RNA virus Severe acute respiratory syndrome coronavirus 2 South Africa 2021-06-25 Panthera leo 29886 2021-11-14 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID ZARV, Department Medical Virology, University of Pretoria Amy Strydom, Adriano Mendes, Katja Koeppel, Lia Rotherham and Marietjie Venter ZARV, Department Medical Virology, University of Pretoria 29411 98.41
OEAV9667616 hCoV-19/lion/SouthAfrica/ZARV-ZRU128/2021 EPI_ISL_6261989 RNA virus Severe acute respiratory syndrome coronavirus 2 South Africa 2021-06-25 Panthera leo 29886 2021-11-14 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID ZARV, Department Medical Virology, University of Pretoria Amy Strydom, Adriano Mendes, Katja Koeppel, Lia Rotherham and Marietjie Venter ZARV, Department Medical Virology, University of Pretoria 29281 97.98
OEAV9667617 hCoV-19/lion/USA/MO-21-033928-007/2021 EPI_ISL_6639383 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-04 Panthera leo 29789 2021-11-23 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Veterinary Medical Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29789 100.00
OEAV9738753 hCoV-19/tiger/USA/CA-21-032685-002/2021 EPI_ISL_6261446 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-25 Panthera tigris 29828 2021-11-14 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID California Animal Health and Food Safety Laboratory - University of California-Davis Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29828 100.00
OEAV9738754 hCoV-19/tiger/USA/CA-21-032969-001/2021 EPI_ISL_6261447 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-27 Panthera tigris tigris 29782 2021-11-14 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID California Animal Health and Food Safety Laboratory - University of California-Davis Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29782 100.00
OEAV9738755 hCoV-19/tiger/USA/CA-21-032969-002/2021 EPI_ISL_6261448 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-27 Panthera tigris tigris 29783 2021-11-14 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID California Animal Health and Food Safety Laboratory - University of California-Davis Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29783 100.00
OEAV9738756 hCoV-19/tiger/USA/CA-SEARCH-113029/2021 EPI_ISL_6257965 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-27 Panthera tigris 29874 2021-11-12 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID San Diego County Public Health Laboratory SEARCH Alliance San Diego with Ashleigh Murphy and Brett Austin Andersen lab at Scripps Research 29640 99.22
OEAV9738757 hCoV-19/tiger/USA/CA-SEARCH-113030/2021 EPI_ISL_6257966 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-27 Panthera tigris 29881 2021-11-12 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID San Diego County Public Health Laboratory SEARCH Alliance San Diego with Ashleigh Murphy and Brett Austin Andersen lab at Scripps Research 29678 99.32
OEAV9738758 hCoV-19/tiger/USA/CA-SEARCH-113034/2021 EPI_ISL_6257968 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-21 Panthera tigris 29874 2021-11-12 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID San Diego County Public Health Laboratory SEARCH Alliance San Diego with Ashleigh Murphy and Brett Austin Andersen lab at Scripps Research 29633 99.19
OEAV9738759 hCoV-19/tiger/USA/MO-21-033928-005/2021 EPI_ISL_6639379 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-04 Panthera tigris 29781 2021-11-23 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Veterinary Medical Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29489 99.02
OEAV9738760 hCoV-19/tiger/USA/NE-21-034299-001/2021 EPI_ISL_6810903 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-07 Panthera tigris 29770 2021-11-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29770 100.00
OEAV9738761 hCoV-19/tiger/USA/NE-21-034299-005/2021 EPI_ISL_6810904 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-07 Panthera tigris 29804 2021-11-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29804 100.00
OEAV9738762 hCoV-19/tiger/USA/NE-TIGER_NCOV21-40166/2021 EPI_ISL_6123998 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-06 Panthera tigris 29760 2021-11-10 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Nebraska Public Health Laboratory NPHL COVID-19 Response Team NPHL COVID-19 Response Team 29189 98.08
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